Gabriela A. Merino

This paper reports on the fourth CAFA challenge, showing improvements in Gene Ontology term prediction but highlighting challenges in new evaluation settings.

The paper studies gene regulatory evolution in salmonids after autotetraploidization, finding that it is influenced by developmental and tissue-specific factors, with constraints at advanced embryogenesis.

The paper identifies progestin control regions (PgCRs) where PR and PAX2 bind to regulate gene expression in endometrial cancer cells.

This study benchmarks nine workflows for detecting differential splicing and isoform expression in RNA-seq, finding that workflow performance depends on replicates and heterogeneity, with Limma, DESeq2, and DEXSeq performing well.