Author

Sophie Allais

Institut Agro Rennes-AngersORCID 0000-0002-0138-331XUnclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Approach:statistical model· 2 Research Focus:variant calling· 2 Approach:benchmark study· 1 Research Focus:benchmarking· 1 Research Focus:genome assembly· 1 Assay:whole-genome sequencing· 1

Frequent Co-Authors

Amandine Varenne· 1 shared David Picard DruetiD· 1 shared Élise GuéretiD· 1 shared Fabien DegaleziD· 1 shared Florian Herry· 1 shared Frédéric HeraultiD· 1 shared Frédéric LecerfiD· 1 shared Laëtitia LagoutteiD· 1 shared

Activity by Year

2020-2024 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 20 mutual co-author links

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1 shared paperGenomics

Amandine Varenne

Mutual co-authors in cluster

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2 papers

Recent·Most cited

Variant calling and genotyping accuracy of ddRAD-seq: comparison with 20X WGS in layers

Mathilde Doublet, Fabien Degalez, Sandrine Lagarrigue, Laëtitia Lagoutte, Élise Guéret, Sophie Allais, Frédéric Lecerf

This study compares ddRAD-seq and 20X WGS for variant calling and genotyping in laying hens, showing ddRAD-seq can retain 40% of SNPs with 98% reliability after quality control.

PLoS ONE · Jul 26, 2024Peer-reviewedGenomics

Relevance of genomic evaluation for egg quality traits in layers

David Picard Druet, Amandine Varenne, Florian Herry, Frédéric Herault, Sophie Allais, Thierry Burlot, Pascale Le Roy

This study compares genomic and genetic evaluation for egg quality traits in poultry, finding genomic evaluation more accurate and beneficial for male selection.

BMC Genetics · Feb 11, 2020Peer-reviewedGenomics