Author

Frédéric Lecerf

Institut Agro Rennes-AngersORCID 0000-0002-6471-1771Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Approach:statistical model· 4 Research Focus:database / resource· 3 Research Focus:benchmarking· 2 Assay:whole-genome sequencing· 2 Approach:benchmark study· 1 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Approach:experimental assay· 1

Frequent Co-Authors

Fabien DegaleziD· 4 shared Laëtitia LagoutteiD· 4 shared Sandrine LagarrigueiD· 4 shared Coralie AllainiD· 3 shared Bénédicte Lebez· 1 shared Christophe KloppiD· 1 shared Dailu GuaniD· 1 shared Elisabetta GiuffraiD· 1 shared

Activity by Year

2024-2026 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 35 mutual co-author links

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4 shared papersGenomics

Fabien DegalezORCID

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4 papers

Recent·Most cited

A single-nucleus atlas of the adult laying hen liver reveals metabolic specialization and improved cellular resolution through enhanced genome annotation

Laëtitia Lagoutte, Coralie Allain, Bénédicte Lebez, Guillaume Cossard, Frédéric Lecerf, Yuna Blum, Sandrine Lagarrigue, Fabien Degalez

The paper creates a single-nucleus RNA sequencing atlas of the adult chicken liver, revealing cellular composition and showing improved resolution through enhanced genome annotation.

bioRxiv · Jul 29, 2026 · PreprintGenomics

Cross-species orthology detection of long non-coding RNAs (lncRNA) through 13 species using genomic and functional annotations.

Fabien Degalez, Coralie Allain, Laëtitia Lagoutte, Frédéric Lecerf, Sandrine Lagarrigue

The paper develops a workflow to detect cross-species orthology of lncRNAs across 13 vertebrate species using syntenic methods and motif analysis, revealing conserved lncRNAs and functional motifs.

bioRxiv · Oct 3, 2024 · PreprintGenomics

Variant calling and genotyping accuracy of ddRAD-seq: comparison with 20X WGS in layers

Mathilde Doublet, Fabien Degalez, Sandrine Lagarrigue, Laëtitia Lagoutte, Élise Guéret, Sophie Allais, Frédéric Lecerf

This study compares ddRAD-seq and 20X WGS for variant calling and genotyping in laying hens, showing ddRAD-seq can retain 40% of SNPs with 98% reliability after quality control.

PLoS ONE · Jul 26, 2024Peer-reviewedGenomics

Enriched atlas of lncRNA and protein-coding genes for the GRCg7b chicken assembly and its functional annotation across 47 tissues.

Fabien Degalez, Mathieu Charles, Sylvain Foissac, Haijuan Zhou, Dailu Guan, Lingzhao Fang, Christophe Klopp, Coralie Allain, Laëtitia Lagoutte, Frédéric Lecerf, Hervé Acloque, Elisabetta Giuffra, Frédérique Pitel A, Sandrine Lagarrigue

The paper creates an enriched gene atlas for the GRCg7b chicken assembly, increasing the number of annotated lncRNAs and PCGs and providing functional annotations across 47 tissues.

Scientific Reports · Mar 19, 2024Peer-reviewedGenomics