Variant calling and genotyping accuracy of ddRAD-seq: comparison with 20X WGS in layers
Mathilde Doublet, Fabien Degalez, Sandrine Lagarrigue…·Frédéric Lecerf
This study compares ddRAD-seq and 20X WGS for variant calling and genotyping in laying hens, showing ddRAD-seq can retain 40% of SNPs with 98% reliability after quality control.