Muyu Yang

The paper introduces DNALO_SCPLOWONGC_SCPLOWBO_SCPLOWENCHC_SCPLOW, a benchmark suite for long-range DNA prediction tasks, and evaluates five methods on five genomics tasks.

This paper introduces HO_SCPLOWEIMDALLC_SCPLOW, a framework to analyze tokenizer design in scFMs, showing that specific tokenization choices improve generalization under distribution shift.

The paper presents haplotype-resolved genomes of six ape species with high accuracy and provides comparative analyses to study evolutionary diversity and gene family evolution.

The paper uses population-scale GUIDE-seq-2 and CHANCE-seq to analyze how genetic variants affect Cas9 activity, finding frequent context-dependent effects on off-target sites.

This paper introduces a workflow for best practices in interpretable machine learning to enhance knowledge discovery in computational biology.