Anthony T. Bejjani

Gene regulatory networks define human airway epithelial cell types and their distinct responses to type I interferon

The paper characterizes gene regulatory networks in human airway epithelial cells and identifies cell type-specific responses to type I interferon.

Gene regulatory network determinants of rapid recall in human memory CD4+ T cells

This study identifies gene regulatory networks in human memory CD4+ T cells that drive rapid recall, linking specific transcription factors to immune-mediated disease risk.

Multiome-seq links inflammatory bowel disease polygenic risk to TNF inhibitor response

The paper links IBD polygenic risk to TNFi response using multiome-seq and genetic data from pediatric IBD patients.

maxATAC: genome-scale transcription-factor binding prediction from ATAC-seq with deep neural networks

maxATAC provides deep learning models for predicting transcription factor binding sites from ATAC-seq data, improving prediction in primary and single-cell contexts.