Author

Jorg J. A. Calis

Utrecht UniversityORCID 0000-0002-7741-3394Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Genomics· 2 Bioinformatics· 1 Systems Biology· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 4 Organism:human· 3 Research Focus:gene regulatory network inference· 2 Assay:scRNA-seq· 2 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Assay:ChIP-seq· 1 Research Focus:differential expression· 1

Frequent Co-Authors

Alain van MiliD· 2 shared Folkert Wouter AsselbergsiD· 2 shared Magdaléna HarakaľováiD· 2 shared Michal MokrýiD· 2 shared Renée G. C. MaasiD· 2 shared Akshata N. Rudrapatna· 1 shared Alec P. PankowiD· 1 shared Alexander Katko· 1 shared

Activity by Year

2020-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 20 mutual co-author links

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2 shared papersGenomics

Alain van MilORCID

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Author profile →

4 papers

Recent·Most cited

Gene regulatory networks define human airway epithelial cell types and their distinct responses to type I interferon

Anthony T. Bejjani, Alec P. Pankow, Ava R. Lamberty, Jorg J. A. Calis, Kira A. Griswold, Ethan Iverson, Andy Kuo, Akshata N. Rudrapatna, Skyler A. Uhl, Roosheel S. Patel, Oded Danziger, Philip Cohen, Erika A. Barrall, Emma J. DeGrace, Fady Gorgy, , Emily R. Miraldi

The paper characterizes gene regulatory networks in human airway epithelial cells and identifies cell type-specific responses to type I interferon.

bioRxiv · May 13, 2026 · PreprintSystems Biology

A Cross-Study Multi-Organ Cell Atlas ofMacaca fascicularis Informed by Human Foundation Model Annotation: A Resource for Translational Target Assessment

Terezinha Maria de Souza, Joshua T. Gamse, Leandro F. Moreno, Marilijn van Rumpt, Gonzalo Nuñez-Moreno, Indu Khatri, Saskia D. van Asten, Nichal V. Khusial, Empar Baltasar Pérez, Ragini Adhav, Tamim Abdelaal, Anna Wojtuszkiewicz, Jorg J. A. Calis, Attila Csala, Anna Dahlman, , Iris C. R. M. Kolder

This paper creates a cross-species single-cell atlas of Macaca fascicularis using human reference labels to improve target qualification and toxicity interpretation in preclinical research.

bioRxiv · Mar 19, 2026 · PreprintBioinformatics

Genome wide association analysis in dilated cardiomyopathy reveals two new key players in systolic heart failure on chromosome 3p25.1 and 22q11.23

Sophie Garnier, Magdaléna Harakaľová, Stefan Weiß, Michal Mokrý, Vera Regitz‐Zagrosek, Christian Hengstenberg, Thomas P. Cappola, Richard Isnard, Eloisa Arbustini, Stuart A. Cook, Jessica van Setten, Jorg J. A. Calis, Hakon H. Hakonarson, Michael P. Morley, Klaus J. Stark, , Philippe Charron

This study performs a large GWAS on dilated cardiomyopathy, identifying two new loci and confirming two existing ones, with potential therapeutic implications.

European Heart Journal · Jan 14, 2021Peer-reviewedGenomics

Transcriptional regulation profiling reveals disrupted lipid metabolism in failing hearts with a pathogenic phospholamban mutation

Jiayi Pei, Renée G. C. Maas, Ema Nagyova, Johannes M.I.H. Gho, C. Snijders Blok, Iris van Adrichem, Jorg J. A. Calis, René van Es, Shahrzad Sepehrkhouy, Dries A. M. Feyen, Noortje A. M. van den Dungen, Nico R. Lansu, Nicolaas de Jonge, Hester M. den Ruijter, Manon M. H. Huibers, , Magdaléna Harakaľová

The paper investigates epigenetic and transcriptional changes in PLN R14del cardiomyopathy, identifying disrupted lipid metabolism and altered gene regulation.

bioRxiv · Nov 30, 2020 · PreprintGenomics