Frédérique Bidard

Sexual reproduction is controlled by successive transcriptomic waves in Podospora anserina

This study identifies five major transcriptomic patterns during sexual reproduction in Podospora anserina and characterizes genes and regulators involved in key biological processes.

Glucose-lactose mixture feeds in industry-like conditions: a gene regulatory network analysis on the hyperproducing Trichoderma reesei strain Rut-C30

The paper analyzes gene regulatory networks in Trichoderma reesei under glucose-lactose mixtures to understand cellulase production regulation.

A RID-like cytosine methyltransferase homologue controls sexual development in the fungus Podospora anserina

This study identifies a DNA methyltransferase gene in Podospora anserina that is essential for sexual development, showing its role in regulating gene expression and interacting with mating-type pathways.

BRANE Cut: Biologically-Related A priori Network Enhancement with Graph cuts for Gene Regulatory Network Inference

BRANE Cut improves gene regulatory network inference by incorporating biological constraints through graph cuts, outperforming existing methods on both simulated and real datasets.