Author

Cyril Firmo

Centre National de la Recherche Scientifique

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 2 Research Focus:benchmarking· 1 Approach:experimental assay· 1 Organism:fungi (other)· 1 Research Focus:gene regulatory network inference· 1 Assay:long-read sequencing· 1 Assay:scRNA-seq· 1 Research Focus:software / tool· 1

Frequent Co-Authors

Sandrine Perrin· 2 shared Antoine MargeotiD· 1 shared Aurélie PirayreiD· 1 shared Cédric Michaud· 1 shared Céline HernandeziD· 1 shared Charlotte BerthelieriD· 1 shared Claire Wallon· 1 shared Corinne BlugeoniD· 1 shared

Activity by Year

2020-2021 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 25 mutual co-author links

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2 shared papersBioinformatics

Sandrine Perrin

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2 papers

Recent·Most cited

Eoulsan 2: an efficient workflow manager for reproducible bulk, long-read and single-cell transcriptomics analyses

Nathalie Lehmann, Sandrine Perrin, Claire Wallon, Xavier Bauquet, Vivien Deshaies, Cyril Firmo, Runxin Du, Charlotte Berthelier, Céline Hernandez, Cédric Michaud, Denis Thieffry, Stéphane Le Crom, Morgane Thomas‐Chollier, Laurent Jourdren

Eoulsan 2 updates a workflow manager to support bulk, long-read, and single-cell transcriptomics analyses with improved infrastructure and module development.

bioRxiv · Oct 13, 2021 · PreprintBioinformatics

Glucose-lactose mixture feeds in industry-like conditions: a gene regulatory network analysis on the hyperproducing Trichoderma reesei strain Rut-C30

Aurélie Pirayre, Laurent C. Duval, Corinne Blugeon, Cyril Firmo, Sandrine Perrin, Etienne Jourdier, Antoine Margeot, Frédérique Bidard

The paper analyzes gene regulatory networks in Trichoderma reesei under glucose-lactose mixtures to understand cellulase production regulation.

BMC Genomics · Dec 1, 2020Peer-reviewedBioinformatics