Anders Berglund

5hmC-profiles in Puerto Rican Hispanic/Latino men with aggressive prostate cancer

The paper identifies 59 differentially methylated genes with concordant epigenetic and transcriptomic changes and 111 DMGs associated with aggressive prostate cancer in Puerto Rican Hispanic/Latino men.

Evaluating the Radiation Sensitivity Index and 12-chemokine gene expression signature for clinical use in a CLIA laboratory

The paper evaluates the reproducibility and clinical applicability of two gene expression signatures under CLIA laboratory standards.

spatialGE: A user-friendly web application to democratize spatial transcriptomics analysis

spatialGE simplifies spatial transcriptomics analysis by providing a user-friendly web interface for non-programmers, enabling tasks like quality control, domain detection, and spatial analysis.

Techniques to Produce and Evaluate Realistic Multivariate Synthetic

The paper evaluates a synthetic data generation technique to address the small sample problem by creating statistically similar synthetic populations.

spatialGE: Quantification and visualization of the tumor microenvironment heterogeneity using spatial transcriptomics

The paper introduces spatialGE, a software tool for quantifying and visualizing tumor microenvironment heterogeneity using spatial transcriptomics data.

Empirically-Derived Synthetic Populations to Mitigate Small Sample Sizes

This paper introduces a method to generate synthetic populations from sparse biomedical data, showing they are statistically similar to observed samples and can help overcome small sample size limitations.