Author

Deepak Kilari

Medical College of WisconsinORCID 0000-0002-6999-1901Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Genetic & Genomic Medicine· 2 Genomics· 1

Signature Assays, Organisms & Methods

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Organism:human· 3 Research Focus:differential expression· 2 Assay:DNA methylation· 2 Approach:statistical model· 2 Research Focus:clustering· 1 Approach:machine learning (classical)· 1 Assay:whole-exome sequencing· 1

Frequent Co-Authors

Jong Y. ParkiD· 2 shared Liang WangiD· 2 shared Amirreza BitarafiD· 1 shared Anai KthariiD· 1 shared Anders BerglundiD· 1 shared Anjishnu BanerjeeiD· 1 shared Ariel Ann NelsoniD· 1 shared Armand Bankhead· 1 shared

Activity by Year

2023-2025 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 20 mutual co-author links

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2 shared papersGenetic & Genomic Medicine

Jong Y. ParkORCID

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3 papers

Recent·Most cited

GenomicsbioRxivPreprintOct 8, 2025

Moving Beyond Binary Biomarkers: Machine Learning Model Resolves Concurrent and Molecularly Heterogeneous Mismatch Repair and Homologous Recombination Deficiencies in Prostate Cancer

Komal Sharma, Divin A. Wilson, Yu Wang…·Navonil De Sarkar

This paper develops a machine learning model to identify molecularly distinct DDR subgroups in prostate cancer, revealing concurrent repair deficiencies and improving therapeutic stratification.

DOI 10.1101/2025.10.08.680958

humanwhole-exome sequencing

𝕏 PostBluesky

Genetic & Genomic MedicineFrontiers in OncologyPeer-reviewedApr 8, 2025

5hmC-profiles in Puerto Rican Hispanic/Latino men with aggressive prostate cancer

Manishkumar S. Patel, Mousa Almubarak, Jaime L. Matta…·Jong Y. Park

The paper identifies 59 differentially methylated genes with concordant epigenetic and transcriptomic changes and 111 DMGs associated with aggressive prostate cancer in Puerto Rican Hispanic/Latino men.

2 citations

humanDNA methylation

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Genetic & Genomic MedicinemedRxivPreprintOct 13, 2023

5-hydroxymethylcytosine sequencing in plasma cell-free DNA identifies unique epigenomic features in prostate cancer patients resistant to androgen deprivation therapy

Qianxia Li, Chiang‐Ching Huang, Shane Huang…·Liang Wang

This study identifies 5hmC-based gene set activity scores in cfDNA as biomarkers for early detection of ADT resistance in prostate cancer.

5 citations

humanDNA methylation

𝕏 PostBluesky