Author

Charlotte Guldborg Nyvold

University of Southern DenmarkORCID 0000-0002-0411-7594Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Approach:statistical model· 2 Research Focus:variant calling· 2 Research Focus:variant effect prediction· 2 Research Focus:benchmarking· 1 Research Focus:differential expression· 1 Approach:experimental assay· 1 Organism:human· 1 Assay:whole-exome sequencing· 1

Frequent Co-Authors

Anita Tranberg Simonsen· 1 shared E. Kjeldsen· 1 shared Hans Beier OmmeniD· 1 shared M. C. Hansen· 1 shared M. Ludvigsen· 1 shared Marcus Høy HanseniD· 1 shared Niels AbildgaardiD· 1 shared Oriane CédileiD· 1 shared

Activity by Year

2019-2020 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 24 mutual co-author links

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1 shared paperBioinformatics

Anita Tranberg Simonsen

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2 papers

Recent·Most cited

BioinformaticsbioRxivPreprintMay 17, 2020

Workstation benchmark of Spark Capable Genome Analysis ToolKit 4 Variant Calling

Marcus Høy Hansen, Anita Tranberg Simonsen, Hans Beier Ommen, Charlotte Guldborg Nyvold

This paper benchmarks Spark-enabled GATK4 tools for variant calling, showing significant speed improvements over GATK3.8 on a single CPU with SSD.

1 citation

whole-genome sequencingstatistical model

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BioinformaticsHemaSpherePeer-reviewedJun 1, 2019

Integrating detection of copy neutral chromosomal losses in a clinical setting in leukemia and lymphoma by means of allelic imbalance and read depth ratio comparison

M. C. Hansen, Oriane Cédile, M. Ludvigsen…·Charlotte Guldborg Nyvold

The paper develops a method to detect copy neutral chromosomal losses in leukemia and lymphoma using allelic imbalance and read depth ratio comparison from whole exome sequencing data.

1 citation

humanwhole-exome sequencing

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