BioinformaticsbioRxivPreprint
Workstation benchmark of Spark Capable Genome Analysis ToolKit 4 Variant Calling
Marcus Høy Hansen, Anita Tranberg Simonsen, Hans Beier Ommen, Charlotte Guldborg Nyvold
This paper benchmarks Spark-enabled GATK4 tools for variant calling, showing significant speed improvements over GATK3.8 on a single CPU with SSD.