Author

Hansen J. Kosasih

Murdoch Children's Research InstituteORCID 0000-0002-0428-6195Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 4

Signature Assays, Organisms & Methods

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Organism:human· 4 Assay:bulk RNA-seq· 3 Research Focus:cell type annotation· 2 Research Focus:differential expression· 2 Approach:machine learning (classical)· 2 Approach:statistical model· 2 Assay:scRNA-seq· 1

Frequent Co-Authors

Alicia OshlackiD· 4 shared Lauren M. BrowniD· 4 shared Paul G. EkertiD· 4 shared Andrew LonsdaleiD· 3 shared Breon SchmidtiD· 2 shared Louise E. A. LudlowiD· 2 shared Teresa SadrasiD· 2 shared Allen GuiD· 1 shared

Activity by Year

2021-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 36 mutual co-author links

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4 shared papersBioinformatics

Alicia OshlackORCID

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4 papers

Recent·Most cited

BioinformaticsbioRxivPreprintAug 29, 2026

Closing the fusion-detection gap in single-cell RNA-seq with a scalable, probe-based workflow

Jovana Maksimovic, Victoria Streeton-Cook, Calandra V Grima…·Teresa Sadras

The paper introduces a probe-based workflow to detect oncogenic gene fusions in single-cell RNA-seq, validated in cancer cell lines and pediatric B-ALL cohorts.

DOI 10.64898/2026.08.26.747171

humanscRNA-seq

𝕏 PostBluesky

BioinformaticsBlood AdvancesPeer-reviewedOct 30, 2023

TALLSorts: a T-cell acute lymphoblastic leukaemia subtype classifier using RNA-seq expression data

Allen Gu, Breon Schmidt, Andrew Lonsdale…·Alicia Oshlack

TALLSorts classifies T-ALL samples using bulk RNA-seq data with high accuracy across four international cohorts.

12 citations

humanbulk RNA-seq

𝕏 PostBluesky

BioinformaticsF1000ResearchPeer-reviewedFeb 3, 2023

Toblerone: detecting exon deletion events in cancer using RNA-seq

Andrew Lonsdale, Andreas Halman, Lauren M. Brown…·Alicia Oshlack

Toblerone detects exon deletions in RNA-seq data, specifically applied to IKZF1 in B-ALL samples, identifying deletions associated with poor prognosis.

5 citations

humanbulk RNA-seq

𝕏 PostBluesky

BioinformaticsbioRxivPreprintAug 1, 2021

ALLSorts: a RNA-Seq classifier for B-Cell Acute Lymphoblastic Leukemia.

Breon Schmidt, Lauren M. Brown, Georgina L. Ryland…·Alicia Oshlack

ALLSorts classifies B-ALL samples into 18 subtypes and five meta-subtypes using RNA-Seq data with high accuracy.

3 citations

humanbulk RNA-seq

𝕏 PostBluesky