Author

Breon Schmidt

The University of MelbourneORCID 0000-0003-0341-3647Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 4

Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 4 Organism:human· 4 Research Focus:cell type annotation· 2 Approach:machine learning (classical)· 2 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1 Approach:statistical model· 1 Research Focus:variant calling· 1

Frequent Co-Authors

Alicia OshlackiD· 4 shared Paul G. EkertiD· 4 shared Ian J. MajewskiiD· 3 shared N. DavidsoniD· 3 shared Andrew LonsdaleiD· 2 shared Hansen J. KosasihiD· 2 shared Lauren M. BrowniD· 2 shared Allen GuiD· 1 shared

Activity by Year

2018-2023 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 37 mutual co-author links

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4 shared papersBioinformatics

Alicia OshlackORCID

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4 papers

Recent·Most cited

BioinformaticsBlood AdvancesPeer-reviewedOct 30, 2023

TALLSorts: a T-cell acute lymphoblastic leukaemia subtype classifier using RNA-seq expression data

Allen Gu, Breon Schmidt, Andrew Lonsdale…·Alicia Oshlack

TALLSorts classifies T-ALL samples using bulk RNA-seq data with high accuracy across four international cohorts.

12 citations

humanbulk RNA-seq

𝕏 PostBluesky

BioinformaticsGenome biologyPeer-reviewedOct 22, 2021

MINTIE: identifying novel structural and splice variants in transcriptomes using RNA-seq data

Marek Cmero, Breon Schmidt, Ian J. Majewski…·N. Davidson

MINTIE identifies novel structural and splice variants in transcriptomes using RNA-seq data, outperforming existing methods in detecting a wide range of variants.

31 citations

humanbulk RNA-seq

𝕏 PostBluesky

BioinformaticsbioRxivPreprintAug 1, 2021

ALLSorts: a RNA-Seq classifier for B-Cell Acute Lymphoblastic Leukemia.

Breon Schmidt, Lauren M. Brown, Georgina L. Ryland…·Alicia Oshlack

ALLSorts classifies B-ALL samples into 18 subtypes and five meta-subtypes using RNA-Seq data with high accuracy.

3 citations

humanbulk RNA-seq

𝕏 PostBluesky

BioinformaticsGigaSciencePeer-reviewedJul 1, 2018

Clinker: visualising fusion genes detected in RNA-seq data

Breon Schmidt, N. Davidson, Anthony D. K. Hawkins…·Alicia Oshlack

Clinker visualizes fusion genes detected in RNA-seq data, enabling interpretable analysis of fusion transcripts and breakpoints in B-ALL.

22 citations

humanbulk RNA-seq

𝕏 PostBluesky