Author

Louise E. A. Ludlow

Murdoch Children's Research InstituteORCID 0009-0000-0001-8946Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2 Systems Biology· 1

Signature Assays, Organisms & Methods

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Organism:human· 3 Research Focus:differential expression· 2 Approach:statistical model· 2 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Research Focus:cell-cell communication· 1 Research Focus:clustering· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

Alicia OshlackiD· 2 shared Hansen J. KosasihiD· 2 shared Lauren M. BrowniD· 2 shared Paul G. EkertiD· 2 shared Alex William HewittiD· 1 shared Andrew LonsdaleiD· 1 shared Antonio AhniD· 1 shared Breon SchmidtiD· 1 shared

Activity by Year

2021-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 25 mutual co-author links

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2 shared papersBioinformatics

Alicia OshlackORCID

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3 papers

Recent·Most cited

BioinformaticsbioRxivPreprintAug 29, 2026

Closing the fusion-detection gap in single-cell RNA-seq with a scalable, probe-based workflow

Jovana Maksimovic, Victoria Streeton-Cook, Calandra V Grima…·Teresa Sadras

The paper introduces a probe-based workflow to detect oncogenic gene fusions in single-cell RNA-seq, validated in cancer cell lines and pediatric B-ALL cohorts.

DOI 10.64898/2026.08.26.747171

humanscRNA-seq

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Systems BiologybioRxivPreprintFeb 5, 2024

Spatial transcriptomic profiling of human retinoblastoma

Luozixian Wang, Sandy S. C. Hung, Daniel Urrutia-Cabrera…·Raymond C.B. Wong

This study uses spatial transcriptomics to analyze human retinoblastoma, revealing tumor heterogeneity, cell-cell communication networks, and key signaling pathways involved in tumor progression.

2 citations

humanspatial transcriptomics

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BioinformaticsbioRxivPreprintAug 1, 2021

ALLSorts: a RNA-Seq classifier for B-Cell Acute Lymphoblastic Leukemia.

Breon Schmidt, Lauren M. Brown, Georgina L. Ryland…·Alicia Oshlack

ALLSorts classifies B-ALL samples into 18 subtypes and five meta-subtypes using RNA-Seq data with high accuracy.

3 citations

humanbulk RNA-seq

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