Author

Andrew Lonsdale

The University of MelbourneORCID 0000-0002-0292-2880Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Organism:human· 5 Assay:bulk RNA-seq· 3 Approach:statistical model· 3 Research Focus:cell type annotation· 2 Approach:machine learning (classical)· 2 Research Focus:differential expression· 1 Approach:experimental assay· 1 Assay:long-read sequencing· 1

Frequent Co-Authors

Alicia OshlackiD· 5 shared Hansen J. KosasihiD· 3 shared Lauren M. BrowniD· 3 shared Paul G. EkertiD· 3 shared Andreas HalmaniD· 2 shared Breon SchmidtiD· 2 shared Allen GuiD· 1 shared Arwa Alkaraki· 1 shared

Activity by Year

2018-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 22 mutual co-author links

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5 shared papersBioinformatics

Alicia OshlackORCID

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Author profile →

6 papers

Recent·Most cited

GenomeProt: User friendly proteogenomics for canonical and non-canonical proteoform characterisation

Hitesh Kore, Josie Gleeson, Ching Yin Wan, Ricardo De Paoli‐Iseppi, Mriga Dutt, Yair D. J. Prawer, Arwa Alkaraki, Andrew Lonsdale, Christine Anne Wells, Lorey K. Smith, Michael B. Clark, Benjamin L. Parker

GenomeProt integrates genomics, transcriptomics, and proteomics to characterise proteoforms, discovering novel proteins and variant-containing peptides in human brain and melanoma samples.

bioRxiv · Aug 12, 2026 · PreprintBioinformatics

Damsel: Analysis and visualisation of DamID sequencing in R

Caitlin G Page, Andrew Lonsdale, Katrina A. Mitchell, Jan Schröder, Kieran F. Harvey, Alicia Oshlack

Damsel provides an R package for end-to-end analysis of DamID sequencing data, including quantification, testing, and visualization of protein-DNA interactions.

Bioinformatics · Nov 18, 2024Peer-reviewedBioinformatics

TALLSorts: a T-cell acute lymphoblastic leukaemia subtype classifier using RNA-seq expression data

Allen Gu, Breon Schmidt, Andrew Lonsdale, Roshan Jalaldeen, Hansen J. Kosasih, Lauren M. Brown, Teresa Sadras, Paul G. Ekert, Alicia Oshlack

TALLSorts classifies T-ALL samples using bulk RNA-seq data with high accuracy across four international cohorts.

Blood Advances · Oct 30, 2023Peer-reviewedBioinformatics

Toblerone: detecting exon deletion events in cancer using RNA-seq

Andrew Lonsdale, Andreas Halman, Lauren M. Brown, Hansen J. Kosasih, Paul G. Ekert, Alicia Oshlack

Toblerone detects exon deletions in RNA-seq data, specifically applied to IKZF1 in B-ALL samples, identifying deletions associated with poor prognosis.

F1000Research · Feb 3, 2023Peer-reviewedBioinformatics

ALLSorts: a RNA-Seq classifier for B-Cell Acute Lymphoblastic Leukemia.

Breon Schmidt, Lauren M. Brown, Georgina L. Ryland, Andrew Lonsdale, Hansen J. Kosasih, Louise E. A. Ludlow, Ian J. Majewski, Piers A. Blombery, Paul G. Ekert, N. Davidson, Alicia Oshlack

ALLSorts classifies B-ALL samples into 18 subtypes and five meta-subtypes using RNA-Seq data with high accuracy.

bioRxiv · Aug 1, 2021 · PreprintBioinformatics

STRetch: detecting and discovering pathogenic short tandem repeats expansions

Harriet Dashnow, Monkol Lek, Belinda Phipson, Andreas Halman, Simon Sadedin, Andrew Lonsdale, Mark R. Davis, Phillipa J. Lamont, Joshua S. Clayton, Nigel G. Laing, Daniel G. MacArthur, Alicia Oshlack

STRetch detects pathogenic short tandem repeat expansions in whole genome sequencing data, revealing novel disease-causing STRs with low false discovery rate.

Genome biology · Aug 21, 2018Peer-reviewedBioinformatics