Peter Kerpedjiev

The paper introduces a genome browser track for visualizing dynamic DNA sequence features at single nucleotide resolution using machine learning-derived scores.

The paper introduces the 4DN Data Portal, a resource for searching and visualizing curated nucleomics data, including Hi-C and other chromosome architecture datasets.

A gapless 3.055 billion bp human genome from HiFi and ultra-long nanopore reads resolves all centromeric arrays and acrocentric p-arms, adding 182 Mbp of new sequence.

The paper presents a comprehensive analysis of fully assembled human centromeres, revealing their architecture, variation, and evolutionary dynamics at high resolution.

StainedGlass provides interactive visualization of large genomic repeats with identity heatmaps to improve evolutionary history inference.

HiNT detects copy number variations and translocations from Hi-C data with single base-pair resolution, outperforming existing methods on simulated and real data.

This paper introduces Scalable Insets, a technique for exploring annotated patterns in multiscale visualizations, improving search speed and comparison accuracy.

HiGlass, a web-based, containerized viewer, enables continuous multiscale navigation of Hi-C contact maps alongside genomic tracks using composable views linked by location and zoom.

HiPiler is an interactive visualization tool for exploring large genome interaction matrices, enabling users to define and analyze regions of interest through thumbnails and linked exploration.