Elena Kostryukova

Draft genome sequences of Hirudo medicinalis and salivary transcriptome of three closely related medicinal leeches

The paper annotates the Hirudo medicinalis genome and analyzes salivary transcriptomes of three leech species to identify salivary cell-specific genes and update knowledge on blood-sucking mechanisms.

VERA: agent-based modeling transmission of antibiotic resistance between human pathogens and gut microbiota

VERA simulates antibiotic resistance transmission between pathogens and gut microbiota, showing nonlinear dependencies and exponential disease spread with pathogen resistance.

Shifts in the gut microbiota structure caused by Helicobacter pylori eradication therapy

This study uses whole genome sequencing to analyze gut microbiota changes after Helicobacter pylori eradication therapy, finding reduced alpha-diversity, shifts in metabolic potential, and increased antibiotic resistance genes.

MetaCherchant - an algorithm for analyzing genomicenvironment of antibiotic resistance genein gut microbiota

MetaCherchant analyzes metagenomic data to reconstruct the genomic environment of antibiotic resistance genes, revealing potential transmission mechanisms in gut microbiota.