Vadim Markovich Govorun

The paper investigates the proteome's role in Mycoplasma gallisepticum under stress, finding it functions as an active regulatory system through physicochemical properties and dynamic complex rearrangements.

This study uses plasma proteomics to differentiate benign and malignant thyroid nodules, identifying a classifier with adjustable specificity for clinical triage.

The paper assesses peptide proteotypicity in-house for targeted proteomics by synthesizing and verifying peptides from three plasma proteins.

The paper establishes a targeted method to assess plasma sample quality using hemolysis markers and proposes integrating hemolysis assessment into standard MRM analysis.

Snapper is a high-sensitive algorithm for detecting methylation motifs from Oxford Nanopore reads, showing improved enrichment sensitivity over existing tools and identifying new methylation sites in H. pylori.

The paper analyzes the respiratory tract microbiota in COVID-19 patients to find associations between microbiota composition and disease severity.

The paper annotates the Hirudo medicinalis genome and analyzes salivary transcriptomes of three leech species to identify salivary cell-specific genes and update knowledge on blood-sucking mechanisms.

Phigaro annotates prophage regions in genome and metagenome assemblies, producing prophage genome maps and taxonomic annotations.

This study uses whole genome sequencing to analyze gut microbiota changes after Helicobacter pylori eradication therapy, finding reduced alpha-diversity, shifts in metabolic potential, and increased antibiotic resistance genes.