Author

Joseph Lewis

University of CambridgeORCID 0000-0002-0477-1756Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Microbiology· 1

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 1 Approach:experimental assay· 1 Organism:human· 1 Assay:metagenomics· 1

Frequent Co-Authors

Alexandre AlmeidaiD· 1 shared Clarissa Asha FebiniaiD· 1 shared Desak Made WihandaniiD· 1 shared Gde Ngurah Indraguna PinatihiD· 1 shared Guy S. JacobsiD· 1 shared Herawati SudoyoiD· 1 shared Hirzi LuqmaniD· 1 shared Lidwina PrilianiiD· 1 shared

Activity by Year

2025-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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1 shared paperMicrobiology

Alexandre AlmeidaORCID

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1 paper

Recent·Most cited

From sporulation to village differentiation: the shaping of the social microbiome over rural-to-urban lifestyle transition in Indonesia

Clarissa Asha Febinia, Hirzi Luqman, Pradiptajati Kusuma, Lidwina Priliani, Joseph Lewis, Desak Made Wihandani, Gde Ngurah Indraguna Pinatih, Herawati Sudoyo, Alexandre Almeida, Safarina G. Malik, Guy S. Jacobs

The paper presents a gut microbiome dataset from Indonesia, revealing novel species and subspecies linked to rural-to-urban lifestyle transitions and showing that community-level diet differences drive microbiome divergence.

Cell Reports · Nov 1, 2025Peer-reviewedMicrobiology