Author

Hanh N. Tran

Pennsylvania State UniversityORCID 0000-0002-0563-9490Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Genomics· 3 Bioinformatics· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 4 Assay:bulk RNA-seq· 2 Research Focus:database / resource· 2 Approach:experimental assay· 2 Research Focus:gene regulatory network inference· 2 Organism:human· 2 Assay:metagenomics· 2 Research Focus:variant calling· 2

Frequent Co-Authors

Emily DavenportiD· 2 shared Yonas I. TekleiD· 2 shared Cheryl A. KelleriD· 1 shared Erica P. RyuiD· 1 shared Fang WangiD· 1 shared Fang WangiD· 1 shared Gregory S. YochumiD· 1 shared Isimeme N. Udu· 1 shared

Activity by Year

2021-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 13 mutual co-author links

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2 shared papersBioinformatics

Emily DavenportORCID

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Author profile →

4 papers

Recent·Most cited

SCiMS: Sex Calling in Metagenomic Sequences

Hanh N. Tran, Kobie J. Kirven, Emily Davenport

SCiMS predicts host chromosomal sex from metagenomic data, outperforming existing tools at low host coverage and across species.

Microbiome · Oct 5, 2026Peer-reviewedBioinformatics

Integrative host transcriptomic and mucosal microbiome profiling reveals region-specific host-microbiome associations across the human intestine

Erica P. Ryu, Cheryl A. Keller, Robert G. Nichols, Hanh N. Tran, Patricia R. Brocious, Leonard Harris, Walter A. Koltun, Gregory S. Yochum, Emily Davenport

The paper identifies region-specific host-microbiome associations in the human intestine using transcriptomic and microbiome data from non-inflamed tissue.

bioRxiv · May 14, 2026 · PreprintGenomics

Omics of an enigmatic marine amoeba uncovers unprecedented giant viruses gene trafficking and provides insights into its complex life cycle

Yonas I. Tekle, Hanh N. Tran, Fang Wang, Mandakini Singla, Isimeme N. Udu

The paper uses integrated omics to study Trichosphaerium, revealing its complete meiosis toolkit, sexual-like processes, and high gene trafficking from giant viruses.

bioRxiv · Apr 20, 2022 · PreprintGenomics

Draft Genome of Cochliopodium minus (Amoebozoa): Insights into Its Complex Sexual Behavior, Across Domain Gene Acquisitions and Metazoan Type Signaling

Yonas I. Tekle, Fang Wang, Hanh N. Tran, T. Danielle Hayes, Joseph F. Ryan

This paper presents a draft genome of Cochliopodium minus, revealing lateral gene transfers and meiosis-related genes, and insights into its sexual behavior.

bioRxiv · Dec 21, 2021 · PreprintGenomics