Author

Robert G. Nichols

Pennsylvania State UniversityORCID 0000-0002-5415-7877Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Organism:bacteria (other)· 1 Assay:bulk RNA-seq· 1 Research Focus:cell-cell communication· 1 Research Focus:differential expression· 1 Approach:experimental assay· 1 Organism:human· 1 Assay:long-read sequencing· 1 Assay:metagenomics· 1

Frequent Co-Authors

Emily DavenportiD· 2 shared Cheryl A. KelleriD· 1 shared Erica P. RyuiD· 1 shared Gregory S. YochumiD· 1 shared Hanh N. TraniD· 1 shared Leonard Harris· 1 shared Patricia R. Brocious· 1 shared Walter A. Koltun· 1 shared

Activity by Year

2024-2026 · peak 1/yr

Co-Author Collaboration Network

8 top collaborators · 28 mutual co-author links

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2 shared papersGenomics

Emily DavenportORCID

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2 papers

Recent·Most cited

GenomicsbioRxivPreprintMay 14, 2026

Integrative host transcriptomic and mucosal microbiome profiling reveals region-specific host-microbiome associations across the human intestine

Erica P. Ryu, Cheryl A. Keller, Robert G. Nichols…·Emily Davenport

The paper identifies region-specific host-microbiome associations in the human intestine using transcriptomic and microbiome data from non-inflamed tissue.

DOI 10.64898/2026.05.13.725025

humanbulk RNA-seq

𝕏 PostBluesky

GenomicsmSystemsPeer-reviewedDec 16, 2024

Clade-specific long-read sequencing increases the accuracy and specificity of the gyrB phylogenetic marker gene

Robert G. Nichols, Emily Davenport

The paper develops long-read sequencing primers for the gyrB gene to improve phylogenetic accuracy and specificity in bacterial classification.

4 citations

bacteria (other)long-read sequencing

𝕏 PostBluesky