Author

Erica P. Ryu

Pennsylvania State UniversityORCID 0000-0002-2379-2528Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Research Focus:differential expression· 2 Organism:human· 2 Assay:metagenomics· 2 Approach:statistical model· 2 Assay:bulk RNA-seq· 1 Research Focus:cell-cell communication· 1 Research Focus:clustering· 1

Frequent Co-Authors

Emily DavenportiD· 2 shared Aashish R. JhaiD· 1 shared Ahmed A. ShibliD· 1 shared Cheryl A. KelleriD· 1 shared David A. RelmaniD· 1 shared Diana M. ProctoriD· 1 shared Dinesh BhandariiD· 1 shared Gregory S. YochumiD· 1 shared

Activity by Year

2024-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 27 mutual co-author links

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2 shared papersGenomics

Emily DavenportORCID

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2 papers

Recent·Most cited

Integrative host transcriptomic and mucosal microbiome profiling reveals region-specific host-microbiome associations across the human intestine

Erica P. Ryu, Cheryl A. Keller, Robert G. Nichols, Hanh N. Tran, Patricia R. Brocious, Leonard Harris, Walter A. Koltun, Gregory S. Yochum, Emily Davenport

The paper identifies region-specific host-microbiome associations in the human intestine using transcriptomic and microbiome data from non-inflamed tissue.

bioRxiv · May 14, 2026 · PreprintGenomics

Nepali oral microbiomes reflect a gradient of lifestyles from traditional to industrialized

Erica P. Ryu, Yoshina Gautam, Diana M. Proctor, Dinesh Bhandari, Sarmila Tandukar, Meera Gupta, Guru Prasad Gautam, David A. Relman, Ahmed A. Shibl, Jeevan Bahadur Sherchand, Aashish R. Jha, Emily Davenport

This study examines oral microbiomes of Nepali individuals with different lifestyles, finding that lifestyle, not geography, shapes microbiome composition across a gradient from foraging to industrialized.

Microbiome · Nov 4, 2024Peer-reviewedMicrobiology