Author

Florian Boecker

University of BonnORCID 0000-0002-0732-6914Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 2 Approach:statistical model· 2 Approach:benchmark study· 1 Organism:C. elegans· 1 Research Focus:differential expression· 1 Organism:Drosophila· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

Alberto PaccanaroiD· 2 shared Alessandro PetriniiD· 2 shared Alice Carolyn McHardyiD· 2 shared Alperen DalkıraniD· 2 shared Branislava GemovićiD· 2 shared Christophe DessimoziD· 2 shared David T. JonesiD· 2 shared Ehsaneddin AsgariiD· 2 shared

Activity by Year

2019-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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2 shared papersBioinformatics

Alberto PaccanaroORCID

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2 papers

Recent·Most cited

On the state of protein function prediction: a report on the fourth CAFA challenge

Rashika Ramola, M. Clara De Paolis Kaluza, Damiano Piovesan, Yisu Peng, Parnal Joshi, Mahta Mehdiabadi, Federica Quaglia, Rita Pancsa, Lucia Beatriz Chemes, Hongryul Ahn, Adrian Altenhoff, Ehsaneddin Asgari, Maria Cristina Aspromonte, Volkan Atalay, Giulia Babbi, , Maarten J. M. F. Reijnders

This paper reports on the fourth CAFA challenge, showing improvements in Gene Ontology term prediction but highlighting challenges in new evaluation settings.

bioRxiv · Jun 12, 2026 · PreprintBioinformatics

The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens

Naihui Zhou, Yuxiang Jiang, Timothy R. Bergquist, Alexandra J. Lee, Balint Z Kacsoh, Alex W. Crocker, Kimberley A. Lewis, George P. Georghiou, Huy N. Nguyen, Md-Nafiz Hamid, Larry Davis, Tunca Doğan, Volkan Atalay, Ahmet Süreyya Rifaioğlu, Alperen Dalkıran, , Enrico Lavezzo

The paper reports results from the CAFA3 challenge, showing improved computational protein function prediction and new annotations for over 1000 genes through experimental screens in C. albicans, P. aureginosa, and Drosophila.

Genome biology · Nov 19, 2019Peer-reviewedBioinformatics