Author

Pranav M. Khade

GenentechORCID 0000-0002-0756-9828Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 1 Research Focus:database / resource· 1 Research Focus:drug response / drug discovery· 1 Approach:graph neural network· 1 Assay:protein sequence· 1 Assay:protein structure· 1 Research Focus:protein structure prediction· 1 Research Focus:software / tool· 1

Frequent Co-Authors

Andrew M. WatkinsiD· 1 shared Iddo FriedbergiD· 1 shared Parnal JoshiiD· 1 shared Sagnik BanerjeeiD· 1 shared Xiao HuiD· 1 shared

Activity by Year

2023-2025 · peak 1/yr

Co-Author Collaboration Network

5 top collaborators · 6 mutual co-author links

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1 shared paperBioinformatics

Andrew M. WatkinsORCID

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2 papers

Recent·Most cited

BRIDGE: A Coarse-Grained Architecture to Embed Protein-Protein Interactions for Therapeutic Applications

Pranav M. Khade, Andrew M. Watkins

BRIDGE is a graph neural network that embeds protein-protein interactions for therapeutic applications, achieving state-of-the-art performance in predicting Ab-Ag affinity and antibody viscosity.

bioRxiv · Apr 11, 2025 · PreprintBioinformatics

GOThresher: a program to remove annotation biases from protein function annotation datasets

Parnal Joshi, Sagnik Banerjee, Xiao Hu, Pranav M. Khade, Iddo Friedberg

GOThresher removes annotation biases from protein function annotation datasets to improve the quality of data for machine learning models.

Bioinformatics · Jan 1, 2023Peer-reviewedBioinformatics