Sagnik Banerjee

GOThresher: a program to remove annotation biases from protein function annotation datasets

GOThresher removes annotation biases from protein function annotation datasets to improve the quality of data for machine learning models.

ABRIDGE: An ultra-compression software for SAM alignment files

ABRIDGE compresses SAM alignment files with lossless and lossy options, achieving higher compression ratios than existing tools for RNA-Seq and DNA-Seq.

FINDER: An automated software package to annotate eukaryotic genes from RNA-Seq data and associated protein sequences

FINDER automatically annotates eukaryotic genes from RNA-Seq data and associated protein sequences, improving accuracy by integrating raw reads and protein evidence.

NGPINT: A Next-generation protein-protein interaction software

NGPINT identifies protein-protein interactions using Y2H data, achieving 95% accuracy in simulated tests and recognizing all validated interactions in published datasets.

Y2H-SCORES: A statistical framework to infer protein-protein interactions from next-generation yeast-two-hybrid sequence data

Y2H-SCORES provides a statistical framework to identify protein-protein interactions from yeast-two-hybrid sequence data by evaluating enrichment, specificity, and in-frame selection.