Ali H. Al-Fatlawi

How informative are structural alphabets for representing protein folds?

This study evaluates how well three structural alphabets retain fold-level information compared to full-structure comparisons using TM-scores as a reference.

Structural insights into FOXP2 multimerization and interactions from AlphaFold3 modeling

This paper uses AlphaFold3 to model the structure and interactions of FOXP2, revealing its hexameric assembly and implications for DNA binding and disease variants.

The Rad52 superfamily as seen by AlphaFold

The paper uses AlphaFold to analyze the structure of Rad52 superfamily proteins across species, confirming their orthology and structural similarities.

Protein secondary structure and remote homology detection

The paper evaluates secondary structure's effectiveness in remote homology detection and finds a simple string comparison on secondary structure performs nearly as well as tertiary structure alignment.

Mutations in bdcA and valS correlate with quinolone resistance in wastewater Escherichia Coli

The paper identifies mutations in bdcA and valS associated with quinolone resistance in wastewater E. coli using genome-wide association analysis.