Author

Bowen Yu

New York UniversityORCID 0000-0002-0852-6280Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Assay:ATAC-seq· 1 Approach:deep learning· 1 Research Focus:differential expression· 1 Research Focus:drug response / drug discovery· 1 Organism:human· 1 Organism:mouse· 1 Approach:statistical model· 1

Frequent Co-Authors

Claudio T. SilvaiD· 1 shared Hongyun Wang· 1 shared Lingzhi XuiD· 1 shared Nicholas John Carriero· 1 shared Ningning WangiD· 1 shared Richard BonneauiD· 1 shared Xi Xian CheniD· 1 shared Yanghan Yu· 1 shared

Activity by Year

2017-2026 · peak 1/yr

Co-Author Collaboration Network

9 top collaborators · 16 mutual co-author links

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1 shared paperBioinformatics

Claudio T. SilvaORCID

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2 papers

Recent·Most cited

Design of high-affinity miniprotein antagonist targeting IL-4Ra for IL-4/IL-13 signal blockade

Yanghan Yu, Ningning Wang, Lingzhi Xu, Hongyun Wang, Ze Zhang, Bowen Yu

The paper designs high-affinity mini-protein antagonists targeting IL-4Ra using deep learning, achieving improved binding affinity and in vivo stability comparable to existing therapies.

bioRxiv · Aug 10, 2026 · PreprintSynthetic Biology

Mocap: Large-scale inference of transcription factor binding sites from chromatin accessibility

Xi Xian Chen, Bowen Yu, Nicholas John Carriero, Claudio T. Silva, Richard Bonneau

Mocap predicts transcription factor binding sites using chromatin accessibility and genomic features, outperforming existing methods for new TF-cell-type combinations.

Nucleic Acids Research · Mar 6, 2017Peer-reviewedBioinformatics