Author

Susan T. Sharfstein

SUNY Polytechnic InstituteORCID 0000-0002-0908-4197Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 2 Organism:mouse· 2 Research Focus:cell type annotation· 1 Research Focus:cell-cell communication· 1 Research Focus:differential expression· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1 Organism:human· 1

Frequent Co-Authors

Nathan E. LewisiD· 2 shared Vijay TejwaniiD· 2 shared Alex Rosa CamposiD· 1 shared Bjørn Gunnar Rude VoldborgiD· 1 shared Bradley Robasky· 1 shared Caressa M. Robinson· 1 shared Chih-Chung Kuo· 1 shared Deniz Baycın Hızal· 1 shared

Activity by Year

2019-2024 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 38 mutual co-author links

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2 shared papersSystems Biology

Nathan E. LewisORCID

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2 papers

Recent·Most cited

Systems BiologyMetabolic EngineeringPeer-reviewedJan 1, 2024

Inferring secretory and metabolic pathway activity from omic data with secCellFie

Helen O. Masson, Mojtaba Samoudi, Caressa M. Robinson…·Nathan E. Lewis

The paper introduces secCellFie, a tool that infers secretory and metabolic pathway activity from omic data, demonstrating its application in immune cells, NAFLD hepatokine secretion, and antibody production in Chinese Hamster Ovary cells.

8 citations

humanmouse

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BioinformaticsJournal of Proteome ResearchPeer-reviewedApr 25, 2019

Proteogenomic annotation of the Chinese hamster reveals extensive novel translation events and endogenous retroviral elements

Shangzhong Li, Seong Won Cha, Kelly Heffner…·Nathan E. Lewis

The paper improves genome annotation for Chinese hamster by integrating RNA-Seq, proteomics, and Ribo-Seq, identifying new proteins and translational events, and addressing retroviral contamination in CHO cell lines.

19 citations

mouseproteomics

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