Author

Chaochun Wei

Shanghai Jiao Tong UniversityORCID 0000-0002-1031-034XUnclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Organism:human· 3 Approach:statistical model· 3 Assay:bulk RNA-seq· 2 Research Focus:differential expression· 2 Research Focus:benchmarking· 1 Research Focus:cell type annotation· 1 Research Focus:gene regulatory network inference· 1 Organism:mouse· 1

Frequent Co-Authors

David L. AdelsoniD· 3 shared Zhiqiang Hu· 2 shared Bergithe E. Oftedal· 1 shared Bing ZhangiD· 1 shared Christopher N. Hahn· 1 shared Danfeng Cao· 1 shared Fazhe Yan· 1 shared Guangrong Qin· 1 shared

Activity by Year

2015-2022 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 31 mutual co-author links

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3 shared papersGenomics

David L. AdelsonORCID

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3 papers

Recent·Most cited

Widespread of horizontal gene transfer events in eukaryotes

Kun Li, Fazhe Yan, Zhongqu Duan, David L. Adelson, Chaochun Wei

The paper identifies widespread horizontal gene transfer events in eukaryotic genomes across multiple species and shows their impact on genome evolution.

bioRxiv · Jul 26, 2022 · PreprintGenomics

Genome-Wide Analysis Of Repetitive Elements Associated With Gene Regulation

Lu Zeng, Stephen Pederson, Danfeng Cao, Zhipeng Qu, Zhiqiang Hu, David L. Adelson, Chaochun Wei

The paper analyzes the genome-wide impact of transposable elements on gene regulation, finding that Alu elements are associated with upregulated gene expression and contribute more to regulatory regions than ancient TEs.

bioRxiv · Jul 11, 2017 · PreprintGenomics

Revealing missing isoforms encoded in the human genome by integrating genomic, transcriptomic and proteomic data

Zhiqiang Hu, Hamish S. Scott, Guangrong Qin, Guangyong Zheng, Xixia Chu, Lu Xie, David L. Adelson, Bergithe E. Oftedal, Parvalthy Venugopal, Milena Barbic, Christopher N. Hahn, Bing Zhang, Xiaojing Wang, Nan Li, Chaochun Wei

The paper identifies 31,566 novel protein-coding transcripts and estimates the total human protein-coding transcripts to be over 200,000 by integrating genomic, transcriptomic, and proteomic data.

Scientific Reports · Jul 9, 2015Peer-reviewedGenomics