Author

Linda Fenske

Justus-Liebig-Universität GießenORCID 0000-0002-1070-498XUnclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2 Ecology· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 4 Assay:whole-genome sequencing· 3 Research Focus:gene regulatory network inference· 2 Research Focus:variant calling· 2 Organism:bacteria (other)· 1 Research Focus:benchmarking· 1 Research Focus:database / resource· 1 Research Focus:differential expression· 1

Frequent Co-Authors

Alexander GoesmanniD· 3 shared Oliver SchwengersiD· 2 shared Benoît MouryiD· 1 shared Chloé FeltiniD· 1 shared Cindy E. MorrisiD· 1 shared Clara Torres BarcelóiD· 1 shared Elita JauneikaiteiD· 1 shared Jonathan M. JacobsiD· 1 shared

Activity by Year

2024-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 23 mutual co-author links

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3 shared papersBioinformatics

Alexander GoesmannORCID

Mutual co-authors in cluster

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4 papers

Recent·Most cited

GenomicsbioRxivPreprintMar 3, 2026

Towards a holistic epidemiology of Streptococcus agalactiae using the BakRep repository

Linda Fenske, Oliver Schwengers, Alexander Goesmann

This study analyzes 37970 Streptococcus agalactiae genomes from BakRep to map population trends and identify metadata gaps in serotypes, lineage-specific genes, and AMR profiles.

DOI 10.64898/2026.03.02.709001

whole-genome sequencingstatistical model

𝕏 PostBluesky

EcologyPLoS PathogensPeer-reviewedDec 30, 2025

Ecological ubiquity and phylogeny drive nestedness in phages-bacteria networks and shape the bacterial defensome

Chloé Feltin, Sylvain Piry, Benoît Moury…·Clara Torres Barceló

The paper investigates phage-bacterial interactions in plant agroecosystems, finding nested network structures and phylogeny-driven defense systems.

3 citations

plant (other)metagenomics

𝕏 PostBluesky

BioinformaticsMicrobial GenomicsPeer-reviewedSep 4, 2025

Evidence of a novel sublineage of Streptococcus agalactiae in elephants from zoo populations in Germany

Linda Fenske, Elita Jauneikaite, María Getino…·Tobias Eisenberg

This study identifies a novel sublineage of Streptococcus agalactiae in German zoo elephants through whole-genome sequencing, showing phylogenetic divergence and clustering by zoo and genotype.

4 citations

whole-genome sequencingstatistical model

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BioinformaticsMicrobial GenomicsPeer-reviewedOct 30, 2024

BakRep - A searchable large-scale web repository for bacterial genomes, characterizations and metadata

Linda Fenske, Lukas Jelonek, Alexander Goesmann, Oliver Schwengers

BakRep provides a searchable web repository of 661,405 bacterial genomes with consistent characterizations and metadata, enabling flexible querying and offline analysis.

6 citations

bacteria (other)whole-genome sequencing

𝕏 PostBluesky