Author

Шарко Федор Сергеевич

Russian Academy of SciencesORCID 0000-0002-1189-5597Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Genomics· 3 Bioinformatics· 1 Molecular Biology· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 3 Assay:whole-genome sequencing· 3 Research Focus:gene regulatory network inference· 2 Approach:statistical model· 2 Research Focus:differential expression· 1 Assay:DNA methylation· 1 Research Focus:genome assembly· 1 Organism:mouse· 1

Frequent Co-Authors

Artem NedoluzhkoiD· 3 shared Alexander M. Mazur· 2 shared Egor ProkhortchoukiD· 2 shared Eugenia BoulyginaiD· 2 shared Jorge Galindo‐VillegasiD· 2 shared Sergey RastorgueviD· 2 shared Svetlana TsygankovaiD· 2 shared Alexey A. PoliloviD· 1 shared

Activity by Year

2019-2024 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 30 mutual co-author links

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3 shared papersGenomics

Artem NedoluzhkoORCID

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Author profile →

5 papers

Recent·Most cited

Dokdo sea lion Zalophus japonicus genome reveals its evolutionary trajectory before extinction

Jung Eun Kim, Asta Blažytė, Jae‐Pil Choi, Changjae Kim, Шарко Федор Сергеевич, Sungwon Jeon, Eun Mi Kim, Hawsun Sohn, Jong Hee Lee, Hyun Woo Kim, Mi Hyun Yoo, Kyunglee Lee, Artem Nedoluzhko, Jong Bhak

The paper sequenced the genome of the extinct Dokdo sea lion to clarify its evolutionary history and genetic diversity before extinction.

bioRxiv · Jul 4, 2024 · PreprintGenomics

CircPrime: a web-based platform for design of specific circular RNA primers

Шарко Федор Сергеевич, Golam Rbbani, Prabhugouda Siriyappagouder, Joost A. M. Raeymaekers, Jorge Galindo‐Villegas, Artem Nedoluzhko, Jorge M. O. Fernandes

CircPrime designs specific circular RNA primers using circRNA coordinates and reference genomes from NCBI.

bioRxiv · Dec 20, 2022 · PreprintBioinformatics

Kaiso regulates DNA methylation homeostasis

Daria Kaplun, Alexey Starshin, Шарко Федор Сергеевич, Kristina Gainova, Galina E. Filonova, Nadezhda Zhigalova, Alexander M. Mazur, Egor Prokhortchouk, Svetlana V. Zhenilo

This study shows Kaiso regulates DNA methylation by forming a complex with DNMT3b, affecting TRIM25 promoter methylation.

International Journal of Molecular Sciences · Jul 15, 2021Peer-reviewedMolecular Biology

Genomic evidence supports the introgression between two sympatric stickleback species inhabiting the White Sea basin

Artem Nedoluzhko, Шарко Федор Сергеевич, Svetlana Tsygankova, Eugenia Boulygina, Amina S. Ibragimova, Anton Teslyuk, Jorge Galindo‐Villegas, Sergey Rastorguev

The paper documents introgression between two sympatric stickleback species using RAD-Seq and bioinformatics tools, identifying introgression-linked markers and unique TE amplification types.

Heliyon · Feb 1, 2021Peer-reviewedGenomics

A draft genome sequence of the miniature parasitoid wasp, Megaphragma amalphitanum

Шарко Федор Сергеевич, Fedor S. Sharko, Brandon M. Lê, Svetlana Tsygankova, Eugenia Boulygina, Sergey Rastorguev, Alexey Sokolov, Fernando Rodríguez, Alexander M. Mazur, Alexey A. Polilov, Richard Benton, M.B. Evgen'ev, Irina R. Arkhipova, Egor Prokhortchouk, Скрябин Константин Георгиевич

This paper reports the genome and transcriptome of the miniature parasitoid wasp Megaphragma amalphitanum, finding that its genome size and gene content are comparable to other chalcid wasps, despite its extreme miniaturization.

PLoS ONE · Dec 23, 2019Peer-reviewedGenomics