Rui Gan

An immunoediting map of human cancers

The paper constructs an immunoediting map of human cancers by analyzing single-cell data from 11057 tumor samples and 17382 healthy samples, revealing common immune cell state changes across cancer types.

The immune map of human body

The paper constructs a high-resolution immune map using single-cell deconvolution of RNA-seq samples from 30 tissues, revealing immune cell distributions across different sexes and ages.

DBSCAN-SWA: an integrated tool for rapid prophage detection and annotation

DBSCAN-SWA rapidly detects and annotates prophages in bacterial genomes with high recall and user-friendly visualizations.

Large-scale single-cell analysis reveals critical immune characteristics of COVID-19 patients

This study uses single-cell RNA sequencing to analyze immune responses in COVID-19 patients, identifying key immune cell changes and molecular pathways linked to disease severity.

PHISDetector: a tool to detect diverse in silico phage-host interaction signals for virome studies

PHISDetector detects and integrates diverse in silico phage-host interaction signals to predict phage-host interactions using machine learning.