Shipeng Yang

HomoeoGWAS identifies homoeolog-group interactions in allopolyploid crops by analyzing genotype encodings and controlling family-wise error across multiple species.

scPCIP annotates plant cell types across species using conserved gene programs, outperforming marker-based and deep-learning methods in held-out datasets.

This study constructs a single-cell transcriptomic atlas of tomato adventitious root development, identifying vascular tissues as key regulators of cell fate transitions and revealing conserved molecular mechanisms across species.