Author

Cheng Si

Qinghai UniversityORCID 0000-0002-9505-6589Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:gene regulatory network inference· 2 Approach:statistical model· 2 Research Focus:cell type annotation· 1 Research Focus:cell-cell communication· 1 Approach:deep learning· 1 Organism:multiple species· 1 Organism:plant (other)· 1 Assay:scRNA-seq· 1

Frequent Co-Authors

Qiwen ZhongiD· 2 shared Shipeng YangiD· 2 shared Xuemei SuniD· 2 shared Cai Yao· 1 shared Haiwang Zhang· 1 shared Lihui Wang· 1 shared Ruolin YangiD· 1 shared Shanni CaoiD· 1 shared

Activity by Year

2025-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 33 mutual co-author links

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2 shared papersPlant Biology

Qiwen ZhongORCID

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2 papers

Recent·Most cited

HomoeoGWAS enables experiment-wide homoeolog-group interaction mapping in allopolyploid crops

Cheng Si, Yujiang Wu, Zhu Sun, Cai Yao, Wei Li, Haiwang Zhang, Lihui Wang, Xuemei Sun, Qiwen Zhong, Shipeng Yang

HomoeoGWAS identifies homoeolog-group interactions in allopolyploid crops by analyzing genotype encodings and controlling family-wise error across multiple species.

bioRxiv · Nov 9, 2026 · PreprintPlant Biology

Single-cell transcriptomic atlas reveals that vascular tissues orchestrate cell fate transitions to initiate adventitious root formation in tomato

Shipeng Yang, Cheng Si, Xiaoting Jiang, Xuemei Sun, Shanni Cao, Qiwen Zhong, Ruolin Yang

This study constructs a single-cell transcriptomic atlas of tomato adventitious root development, identifying vascular tissues as key regulators of cell fate transitions and revealing conserved molecular mechanisms across species.

bioRxiv · Dec 27, 2025 · PreprintPlant Biology