Author

Xuemei Sun

Qinghai UniversityORCID 0000-0002-4501-7098Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 2 Approach:deep learning· 2 Research Focus:gene regulatory network inference· 2 Organism:plant (other)· 2 Assay:scRNA-seq· 2 Approach:statistical model· 2 Research Focus:cell-cell communication· 1 Organism:multiple species· 1

Frequent Co-Authors

Qiwen ZhongiD· 3 shared Shipeng YangiD· 3 shared Cai Yao· 2 shared Cheng SiiD· 2 shared Lihui Wang· 2 shared Wei Li· 2 shared Yujiang Wu· 2 shared Zhu Sun· 2 shared

Activity by Year

2025-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 43 mutual co-author links

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3 shared papersPlant Biology

Qiwen ZhongORCID

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3 papers

Recent·Most cited

HomoeoGWAS enables experiment-wide homoeolog-group interaction mapping in allopolyploid crops

Cheng Si, Yujiang Wu, Zhu Sun, Cai Yao, Wei Li, Haiwang Zhang, Lihui Wang, Xuemei Sun, Qiwen Zhong, Shipeng Yang

HomoeoGWAS identifies homoeolog-group interactions in allopolyploid crops by analyzing genotype encodings and controlling family-wise error across multiple species.

bioRxiv · Nov 9, 2026 · PreprintPlant Biology

scPCIP: cross-species annotation of plant cell types with conserved gene programs

Shipeng Yang, Chen Si, Yujiang Wu, Zhu Sun, Cai Yao, Xuemei Sun, Lihui Wang, Wei Li, Qiwen Zhong

scPCIP annotates plant cell types across species using conserved gene programs, outperforming marker-based and deep-learning methods in held-out datasets.

bioRxiv · Nov 4, 2026 · PreprintBioinformatics

Single-cell transcriptomic atlas reveals that vascular tissues orchestrate cell fate transitions to initiate adventitious root formation in tomato

Shipeng Yang, Cheng Si, Xiaoting Jiang, Xuemei Sun, Shanni Cao, Qiwen Zhong, Ruolin Yang

This study constructs a single-cell transcriptomic atlas of tomato adventitious root development, identifying vascular tissues as key regulators of cell fate transitions and revealing conserved molecular mechanisms across species.

bioRxiv · Dec 27, 2025 · PreprintPlant Biology