Author

Matej Antol

Masaryk UniversityORCID 0000-0002-1380-5647Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:database / resource· 2 Assay:protein structure· 2 Research Focus:benchmarking· 1 Approach:deep learning· 1 Approach:machine learning (classical)· 1 Research Focus:sequence-to-function modeling· 1 Research Focus:software / tool· 1 Approach:statistical model· 1

Frequent Co-Authors

Adrián RošineciD· 2 shared David ProcházkaiD· 2 shared Jakub ČillíkiD· 2 shared Jana PorubskáiD· 2 shared Jaroslav OľhaiD· 2 shared Katarína GrešováiD· 2 shared Radka Svobodová VařekováiD· 2 shared Terézia SlaninákováiD· 2 shared

Activity by Year

2024-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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2 shared papersBioinformatics

Adrián RošinecORCID

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2 papers

Recent·Most cited

BioinformaticsNucleic Acids ResearchPeer-reviewedApr 11, 2026

AlphaFind v2: Similarity Search in AlphaFold DB and TED Domains across Structural Contexts

Terézia Slanináková, Adrián Rošinec, Jakub Čillík…·Matej Antol

AlphaFind v2 enables fast, structure-based search across protein structures and domains, using embeddings and US-align for refinement and supporting organism and CATH-based filtering.

2 citations

protein structuredeep learning

𝕏 PostBluesky

BioinformaticsbioRxivPreprintFeb 15, 2024

AlphaFind: Discover structure similarity across the entire known proteome

David Procházka, Terézia Slanináková, Jaroslav Oľha…·Matej Antol

AlphaFind provides a web-based tool for fast structure-based retrieval of protein structures from AlphaFold DB using 3D features and machine learning.

2 citations

protein structuremachine learning (classical)

𝕏 PostBluesky