Author

Yuewei Lin

Brookhaven National LaboratoryORCID 0000-0002-1429-4543Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Cell Biology· 1

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 1 Research Focus:clustering· 1 Approach:contrastive learning· 1 Approach:deep learning· 1 Research Focus:differential expression· 1 Assay:fluorescence / live-cell microscopy· 1 Organism:fungi (other)· 1 Assay:imaging· 1

Frequent Co-Authors

Qun LiuiD· 2 shared Liguo WangiD· 1 shared Shinjae YooiD· 1 shared Xianghui XiaoiD· 1 shared Xiao ZhangiD· 1 shared Xin DaiiD· 1 shared Yang YangiD· 1 shared Yong S. ChuiD· 1 shared

Activity by Year

2025-2026 · peak 1/yr

Co-Author Collaboration Network

9 top collaborators · 24 mutual co-author links

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2 shared papersBioinformatics

Qun LiuORCID

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2 papers

Recent·Most cited

BioinformaticsbioRxivPreprintApr 22, 2026

PEACE: Prototype-aware Effector Analysis via Contrastive Embeddings

Xin Dai, Yuewei Lin, Shinjae Yoo, Qun Liu

PEACE improves effector protein prediction by using contrastive embeddings and prototype-aware training, outperforming EffectorP 3.0 on fungal and fungi+oomycete datasets.

DOI 10.64898/2026.04.19.719514

fungi (other)protein sequence

𝕏 PostBluesky

Cell BiologyCommunications BiologyPeer-reviewedJul 1, 2025

SwinCell: a transformer-based framework for dense 3D cellular segmentation

Xiao Zhang, Zihan Lin, Liguo Wang…·Qun Liu

SwinCell is a 3D transformer-based framework that improves segmentation of dense cellular images by balancing local feature recognition and contextual understanding.

7 citations

imagingfluorescence / live-cell microscopy

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