Qun Liu

This study investigates how varying PDA media strengths affect the growth of Colletotrichum sublineola using proteomics and metabolomics, revealing nutrient limitation-induced sporulation and metabolic reprogramming.

The paper reports cryo-EM structures of the Zn2+ ABC transporter ZnuB-ZnuC from E. coli, revealing a self-regulating mechanism via a zinc sensor.

The paper integrates thirteen fungal metabolic models into a unified framework, improves their consistency, and uses them to analyze bioenergetic differences across species.

PEACE improves effector protein prediction by using contrastive embeddings and prototype-aware training, outperforming EffectorP 3.0 on fungal and fungi+oomycete datasets.

This study identifies and classifies effectors from the fungal pathogen Colletotrichum sublineola, mapping their roles in plant immune responses and pathogenicity.

The paper predicts SARS-CoV-2 spike glycoprotein interactions with the human proteome using AlphaFold and molecular dynamics simulations, identifying potential binding sites and validating them experimentally.

SwinCell is a 3D transformer-based framework that improves segmentation of dense cellular images by balancing local feature recognition and contextual understanding.

This work integrates AlphaFold with a deep learning tool, CryoFEM, to improve the accuracy of 3-D atomic models built from cryo-EM maps.

The paper reports the chromosome-level genome of the white-spotted bamboo shark and shows chromosome rearrangements contribute to phenotypic diversity in cartilaginous fishes.