Author

Atul Kakrana

University of DelawareORCID 0000-0002-1495-7351Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 3 Research Focus:gene regulatory network inference· 3 Approach:statistical model· 3 Research Focus:cell type annotation· 2 Organism:plant (other)· 2 Research Focus:benchmarking· 1 Research Focus:deconvolution· 1 Approach:deep learning· 1

Frequent Co-Authors

Blake C. MeyersiD· 3 shared Sandra M. MathioniiD· 2 shared Deepti AnandiD· 1 shared Finn HartmanniD· 1 shared Karina van der LindeiD· 1 shared Parth PateliD· 1 shared Pingchuan LiiD· 1 shared Reza K. HammondiD· 1 shared

Activity by Year

2017-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 23 mutual co-author links

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3 shared papersPlant Biology

Blake C. MeyersORCID

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3 papers

Recent·Most cited

Plant BiologybioRxivPreprintJul 13, 2026

Phasis: a software tool for register-resolved discovery of plant phased small RNA loci

Thales Henrique Cherubino Ribeiro, Atul Kakrana, Vinícius Andrade Maia…·Blake C. Meyers

Phasis identifies plant PHAS loci from small RNA sequencing data by combining statistical evidence and a register-resolved interpretation layer, outperforming existing tools in benchmark analyses.

DOI 10.64898/2026.07.11.737977

plant (other)bulk RNA-seq

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Plant BiologyBMC Plant BiologyPeer-reviewedJul 8, 2026

A multi-omics approach to maize (Zea mays) tassel development

Finn Hartmann, Sandra M. Mathioni, Atul Kakrana…·Karina van der Linde

The paper profiles transcriptomes, small RNAs, and proteomes in maize tassels at four stages to understand gene regulation during development and identify miRNAs involved in hormone signaling and anther differentiation.

DOI 10.1186/s12870-026-09413-w

zebrafishbulk RNA-seq

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BioinformaticsbioRxivPreprintJul 3, 2017

PHASIS: A computational suite for de novo discovery and characterization of phased, siRNA-generating loci and their miRNA triggers

Atul Kakrana, Pingchuan Li, Parth Patel…·Blake C. Meyers

PHASIS is a computational tool for discovering and characterizing phased siRNA-generating loci and their miRNA triggers, with high sensitivity and scalability.

28 citations

plant (other)bulk RNA-seq

𝕏 PostBluesky