Author

Ye Won Cho

Harvard UniversityORCID 0000-0002-1502-2195Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:cell-cell communication· 2 Organism:human· 2 Assay:spatial transcriptomics· 2 Approach:statistical model· 2 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Research Focus:clustering· 1 Research Focus:differential expression· 1

Frequent Co-Authors

Alex K. ShalekiD· 2 shared Chia-Yu CheniD· 2 shared Sizun JiangiD· 2 shared Stephanie Pei Tung YiuiD· 2 shared Wenrui WuiD· 2 shared Amelia R. Schroeder· 1 shared Anki Basak· 1 shared Ankit Basak· 1 shared

Activity by Year

2024-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 39 mutual co-author links

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2 shared papersGenomics

Alex K. ShalekORCID

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2 papers

Recent·Most cited

Toward Computationally Complete Spatial Omics

Wei Li, Liran Mao, Yunhe Liu, Fuduan Peng, Nadja Sachs, Wenrui Wu, Stephanie Pei Tung Yiu, Hanying Yan, Amelia R. Schroeder, Xiaokang Yu, Kaitian Jin, Shunzhou Jiang, Zihao Chen, Melanie Loth, Lorena Isabel Gomez, , Ming Li

COSIE is a computational framework that integrates multiple spatial omics modalities to generate high-resolution molecular landscapes, outperforming existing methods across diverse datasets.

bioRxiv · Mar 5, 2026 · PreprintGenomics

Same-Slide Spatial Multi-Omics Integration Reveals Tumor Virus-Linked Spatial Reorganization of the Tumor Microenvironment

Yao Yu Yeo, Yuzhou Chang, Huaying Qiu, Stephanie Pei Tung Yiu, Hendrik A. Michel, Wenrui Wu, Xiaojie Jin, Shoko Kure, Lindsay K. Parmelee, Shuli Luo, Precious Cramer, Jia Le Lee, Yang Wang, Jason Yeung, Nourhan El Ahmar, , Sizun Jiang

This paper introduces IN-DEPTH and SGCC for spatial multi-omics analysis, revealing EBV-related immunomodulatory differences in DLBCL.

bioRxiv · Dec 20, 2024 · PreprintSystems Biology