Author

Emma V. Waters

Quadram InstituteORCID 0000-0002-1534-7838Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Organism:bacteria (other)· 3 Research Focus:differential expression· 2 Approach:statistical model· 2 Assay:whole-genome sequencing· 2 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1 Assay:long-read sequencing· 1 Approach:matrix factorization· 1

Frequent Co-Authors

Gemma C. LangridgeiD· 3 shared Marie Anne ChattawayiD· 2 shared Amina Ismail AhmediD· 1 shared Beata OrzechowskaiD· 1 shared Claire HilliD· 1 shared Frieda JorgenseniD· 1 shared Jana K. Ahmed· 1 shared John R. WainiD· 1 shared

Activity by Year

2022-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 23 mutual co-author links

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3 shared papersGenomics

Gemma C. LangridgeORCID

Mutual co-authors in cluster

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3 papers

Recent·Most cited

GenomicsbioRxivPreprintJun 10, 2026

Salmonella Genomic Markers for Risk to Food Safety

Emma V. Waters, Claire Hill, Beata Orzechowska…·Gemma C. Langridge

The paper identifies genomic markers in Salmonella isolates that correlate with infection risk, showing lineage-specific associations and a conserved prophage marker in Salmonella Agona.

DOI 10.64898/2026.03.27.714810

bacteria (other)whole-genome sequencing

𝕏 PostBluesky

GenomicsbioRxivPreprintJul 3, 2024

From Acute to Persistent Infection: Revealing Phylogenomic Variations in Salmonella Agona

Emma V. Waters, Winnie W. Y. Lee, Amina Ismail Ahmed…·Gemma C. Langridge

The paper examines phylogenomic variations in Salmonella Agona during acute and persistent infections, finding increased genome rearrangements and SNP variation in early carriage.

1 citation

bacteria (other)whole-genome sequencing

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GenomicsEvolution LettersPeer-reviewedNov 19, 2022

Impact of Salmonella genome rearrangement on gene expression

Emma V. Waters, Liam A. Tucker, Jana K. Ahmed…·Gemma C. Langridge

This study investigates how genome rearrangements in Salmonella affect gene expression by analyzing four rearranged isolates using transcriptomics.

18 citations

bacteria (other)long-read sequencing

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