Helena Todorov

This study tracks microbial community assembly in soil bacteria, showing that spatial interactions and growth kinetics determine species success and community composition.

The paper shows that fragmented microhabitats lead to more variable bacterial interactions, enabling alternative outcomes and supporting species diversity.

Dimalis automates the analysis of bacterial cell growth from time-lapse imaging, providing standardized outputs for downstream processing.

This study develops and benchmarks coculture microcolony experiments to quantify interspecific interactions and growth kinetics in bacterial communities.

STrack is a tool for tracking bacterial cells in time-lapse microscopy images, showing high consistency across six bacterial strains.

This paper benchmarks 29 trajectory inference methods on real and synthetic datasets, identifies top-performing tools, and provides guidelines for users.