Author

Jeremy E. Coate

Reed CollegeORCID 0000-0002-1619-8643Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Genetics· 1 Plant Biology· 1

Signature Assays, Organisms & Methods

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Organism:Drosophila· 2 Approach:experimental assay· 2 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Research Focus:differential expression· 1 Organism:plant (other)· 1 Assay:scRNA-seq· 1 Approach:statistical model· 1

Frequent Co-Authors

Sarah SchaackiD· 2 shared Andrew D FarmeriD· 1 shared Chandler M. SprueilliD· 1 shared Eddie K. H. HoiD· 1 shared Eli Sobel· 1 shared Erik J. AmézquitaiD· 1 shared Hengping XuiD· 1 shared Henry SchefferiD· 1 shared

Activity by Year

2021-2024 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 19 mutual co-author links

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2 shared papersBioinformatics

Sarah SchaackORCID

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3 papers

Recent·Most cited

Plant BiologybioRxivPreprintJul 8, 2024

Tabula Glycine: The whole-soybean single-cell resolution transcriptome atlas

Sergio Alan Cervantes-Pérez, Sandra Thibivilliers, Sahand Amini…·Marc Libault

The paper presents a single-cell transcriptome atlas of soybean, identifying 157 cell clusters and highlighting transcription factors' role in defining cell types and their origin.

9 citations

plant (other)scRNA-seq

𝕏 PostBluesky

BioinformaticsbioRxivPreprintMay 31, 2022

Estimating somatic mutation rates by Duplex Sequencing in non-model organisms: Daphnia magna as a case study

Eli Sobel, Jeremy E. Coate, Sarah Schaack

This study estimates somatic mutation rates in Daphnia magna using Duplex Sequencing, finding a rate of 2.14 x 10-7 substitutions per site.

DOI 10.1101/2022.05.31.494242

Drosophilawhole-genome sequencing

𝕏 PostBluesky

GeneticsbioRxivPreprintJan 5, 2021

Heat shock protein gene expression is higher and more variable with thermal stress and mutation accumulation in Daphnia

Henry Scheffer, Jeremy E. Coate, Eddie K. H. Ho, Sarah Schaack

The paper measures HSP90 and HSP60 expression in Daphnia magna under thermal stress and mutation accumulation, finding increased expression and synergistic effects.

DOI 10.1101/2021.01.05.425442

Drosophilabulk RNA-seq

𝕏 PostBluesky