Author

Michael Gruenstaeudl

Freie Universität BerlinORCID 0000-0002-1666-1773Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Approach:statistical model· 4 Assay:whole-genome sequencing· 4 Research Focus:benchmarking· 3 Research Focus:database / resource· 2 Assay:DNA methylation· 2 Research Focus:software / tool· 2 Research Focus:dimensionality reduction· 1 Approach:experimental assay· 1

Frequent Co-Authors

Nils JenkeiD· 2 shared Yannick HartmaringiD· 1 shared

Activity by Year

2019-2022 · peak 2/yr

Co-Author Collaboration Network

2 top collaborators · 0 mutual co-author links

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2 shared papersGenomics

Nils JenkeORCID

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4 papers

Recent·Most cited

GenomicsbioRxivPreprintMay 6, 2022

Depth and evenness of sequence coverage are associated with assembly quality, genome structure, and choice of sequencing platform in archived plastid genomes

Nils Jenke, Michael Gruenstaeudl

The paper evaluates how sequencing depth and evenness affect plastid genome assembly quality and structure across different genomic regions and platforms.

DOI 10.1101/2022.05.06.490930

whole-genome sequencingstatistical model

𝕏 PostBluesky

BioinformaticsBMC BioinformaticsPeer-reviewedMay 24, 2020

PACVr: Plastome Assembly Coverage Visualization in R

Michael Gruenstaeudl, Nils Jenke

PACVr visualizes plastid genome coverage depth on a circular, quadripartite map and identifies gene synteny in inverted repeats to improve assembly quality.

342 citationstop 1%

DNA methylationwhole-genome sequencing

𝕏 PostBluesky

BioinformaticsBioinformaticsPeer-reviewedMar 24, 2020

annonex2embl: automatic preparation of annotated DNA sequences for bulk submissions to ENA

Michael Gruenstaeudl

annonex2embl automates the preparation of annotated DNA sequences for bulk submissions to ENA, handling alignment conversion and metadata integration.

13 citations

fungi (other)whole-genome sequencing

𝕏 PostBluesky

BioinformaticsPLoS ONEPeer-reviewedJan 10, 2019

EMBL2checklists: A Python package to facilitate the user-friendly submission of plant DNA barcoding sequences to ENA

Michael Gruenstaeudl, Yannick Hartmaring

EMBL2checklists automates the conversion of plant DNA barcoding sequences into ENA submission-ready checklists, streamlining data sharing for researchers.

8 citations

plant (other)DNA methylation

𝕏 PostBluesky