Author

Nils Jenke

Freie Universität BerlinORCID 0009-0006-2481-6196Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 2 Approach:statistical model· 2 Assay:whole-genome sequencing· 2 Research Focus:dimensionality reduction· 1 Assay:DNA methylation· 1 Approach:experimental assay· 1 Research Focus:software / tool· 1

Frequent Co-Authors

Michael GruenstaeudliD· 2 shared

Activity by Year

2020-2022 · peak 1/yr

2 papers

Recent·Most cited

GenomicsbioRxivPreprintMay 6, 2022

Depth and evenness of sequence coverage are associated with assembly quality, genome structure, and choice of sequencing platform in archived plastid genomes

Nils Jenke, Michael Gruenstaeudl

The paper evaluates how sequencing depth and evenness affect plastid genome assembly quality and structure across different genomic regions and platforms.

DOI 10.1101/2022.05.06.490930

whole-genome sequencingstatistical model

𝕏 PostBluesky

BioinformaticsBMC BioinformaticsPeer-reviewedMay 24, 2020

PACVr: Plastome Assembly Coverage Visualization in R

Michael Gruenstaeudl, Nils Jenke

PACVr visualizes plastid genome coverage depth on a circular, quadripartite map and identifies gene synteny in inverted repeats to improve assembly quality.

342 citationstop 1%

DNA methylationwhole-genome sequencing

𝕏 PostBluesky