Craig G. Simpson

EoRNA2 expands its barley gene expression database with more samples and improved infrastructure, featuring automated workflows and a new reference transcript dataset.

This study identifies RiABP19, a Germin-like protein gene, as a key player in raspberry resistance to Phytophthora root rot through transcriptomic analysis and functional assays.

This study presents a barley pangenome revealing structural variation linked to traits like disease resistance and plant architecture, highlighting its role in adaptive evolution.

This study identifies a VRN1 homologue in raspberry that, when silenced by upstream insertions in Glen Dee, causes dormancy misregulation and altered gene expression.

The paper develops EoRNA, a barley gene and transcript abundance database, using RNA-seq data from 22 experiments across 843 samples to provide gene and transcript expression profiles.

This study shows that UPF1 is essential for post-transcriptional and translational regulation in Arabidopsis, affecting alternative splicing, translation, and immune receptor activation.

The paper develops BaRTv1.0, a high-quality barley reference transcript dataset, enabling accurate RNA-seq analysis of gene expression and alternative splicing.

The paper shows that sugars act as mobile signals controlling alternative splicing in roots through the TOR kinase pathway, with mitochondria playing a key role in this process.