Author

Michal Punčochář

University of TrentoORCID 0000-0002-1915-9391Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 2 Assay:metagenomics· 2 Approach:statistical model· 2 Organism:bacteria (other)· 1 Research Focus:database / resource· 1 Organism:human· 1 Approach:machine learning (classical)· 1 Approach:mixed model· 1

Frequent Co-Authors

Curtis HuttenhoweriD· 2 shared Eric A. FranzosaiD· 2 shared Francesco AsnicariD· 2 shared Kelsey N. ThompsoniD· 2 shared Lauren J. McIveriD· 2 shared Nicola SegataiD· 2 shared Aaron M. WalshiD· 1 shared Adrian TettiD· 1 shared

Activity by Year

2022-2024 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 42 mutual co-author links

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2 shared papersMicrobiology

Curtis HuttenhowerORCID

Mutual co-authors in cluster

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2 papers

Recent·Most cited

MicrobiologybioRxivPreprintNov 8, 2024

Evaluating metagenomic analyses for undercharacterized environments: what's needed to light up the microbial dark matter?

William A. Nickols, Lauren J. McIver, Aaron M. Walsh…·Kelsey N. Thompson

The paper evaluates metagenomic analysis methods in simulated and real environmental data, finding that newer marker-based methods perform better at lower taxonomic levels.

3 citations

metagenomicsstatistical model

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BioinformaticsbioRxivPreprintAug 22, 2022

✦ In-depth digest

Extending and improving metagenomic taxonomic profiling with uncharacterized species with MetaPhlAn 4

Aitor Blanco‐Míguez, Francesco Beghini, Fabio Cumbo…·Nicola Segata

Marker genes for 26,970 species-level genome bins, 4,992 defined only by metagenome-assembled genomes, let MetaPhlAn 4 quantify uncharacterized species and beat MetaPhlAn 3, mOTUs and Bracken on synthetic benchmarks.

89 citations

humanmouse

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