Shivesh Chaudhary

The paper harmonizes whole-brain imaging datasets from multiple labs to enable automated neuron identification and identifies factors influencing neuron positioning in C. elegans.

Baikal improves fluorescence microscopy image denoising using diffusion models without requiring paired noisy and clean images.

This paper introduces a deep learning framework for neuro-imaging denoising that improves speed, memory efficiency, and accuracy while requiring minimal training data.

CRF_ID automates cell identity annotation in dense images, achieving higher accuracy and robustness than existing methods across various experimental conditions and organisms.